Software

Here we offer selection of our fully developed open-source software packages. For a list of minor software packages/tools associated to publication by our group, please see here.

MMMx

Toolbox for integrative protein ensemble modeling based on distance distribution information for determining ensemble width. Fully scriptable and extended successor of MMM for creating modeling pipelines. Visualization scripts require MMM, which must run in the same Matlab window.

Version 2023.2 corresponds to commit cc0b809 (April 3rd 2023) external page on GitHub. external page Documentation and example set will be continuously extended.

external page Documentation (external web page)

Download Matlab source including resources (ZIP, 913.5 MB)

Unpack the ZIP file and add directory to the Matlab path.

Download Windows executable installer (EXE, 115.9 MB) (still version 1.1, inform us if you need this at a higher version)

Double-click the installer and follow instructions. Add directory to the Windows path. Open a windows command prompt and type MMMx docs to see the documentation.

Download Example set (ZIP, 4 KB)

Unpack the ZIP file. Double-click the MMMx icon and load one of the example .mcx files from the file browser window that opens. In Matlab, type 'MMMx' at the command prompt. You can also type MMMx with the .mcx file name as an argument at the command prompt. Typing 'MMMx docs' at the Matlab command prompt opens the documentation pages in a browser.